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FAQs & Help

Click on "latest faqs" to list all the Frequently Asked Questions. Also, check out "http://mgltools.scripps.edu/documentation/" for additional help on ADT.

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Instructions on how to contribute to and use this resource.

Latest FAQs: Lowest energy or Largest Cluster? How to evaluate docking results; Metal Charges; Co-factors and Nucleic Acids; Side Chain Alternate Confirmations; Water: my target crystal structure has some waters in the active site, what should I do with them?; All FAQs

Latest How-tos: How-to dock a ligand with many torsions; Adding new atom parameters to AutoDock; How to prepare a receptor file for AutoDock4; How to prepare a grid parameter file for AutoGrid 4; How to compile autodock as native 64 bit windows application; All How-tos

Latest Tutorials: Using AutoLigand with AutoDockTools; Flexible rings docking; VI European Workshop on Drug Design - Molecular Docking Tutorial; AutoDock Vina Video Tutorial; Using AutoDock 4 for Virtual Screening; All Tutorials

Latest Reference Manuals: AutoDock 4.2 User Guide; AutoDock Vina Manual Page; AutoDock 3 User's Guide; All Reference Manuals

Latest Error References: autodock3: wrong number of values read in. Check grid map!; ADT: "formatted for autodock4, unable to save in autodock3 format"; All Error References

Latest Links: Programs & Scripts by Mihaly Mezei; Formula for Determining the "Goodness of Hit Lists" in 3D Database Searches; ZINC; ADT; BDT; All Links

Latest Glossary Definitions: Cross Docking; Redocking; GLG; DLG; GPF; All Glossary Definitions

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