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FAQs
View entire FAQ in fullFrequently Asked Questions (& Answers!)
| Sections |
|---|
| General Questions |
| Scientific Questions |
| Obtaining AutoDock |
| Installing AutoDock |
| Technical Questions |
| Running AutoDock |
| Running ADT |
| Virtual Screening |
| Analysing Results |
General Questions
View section in full- How can I learn more about how to use Cygwin/Linux/Mac OS X?
- How do I join the ADL (AutoDock mailing list)?
- How do I search the ADL (AutoDock mailing list) archives?
- How do I report a bug?
- Is there a graphical user interface to AutoGrid and AutoDock?
- Can't find or open a file?
- Where can I find the Python scripts for preparing and analysing AutoDock dockings?
- How should I prepare a ligand for docking with AutoDock?
Analysing Results
View section in full- How do I visualise the docking results in the AutoDock log file?
- How do I evaluate AutoDock's clustering results?
- I used "get-dockings" to extract the docked conformations. Where is the macromolecule?
- I get very high Reference RMSD values in my DLG; what went wrong?
- Is there a way to save a protein-ligand complex as a PDB file in AutoDock?
- What should I look for when I visualize a docked compound?
- In a flexible receptor docking in AutoDock 4, which atoms are used in the clustering?
by
morris
—
last modified
2007-07-19 17:31
Contributors:
Ruth Huey, Garrett M. Morris
Copyright (C) The Scripps Research Institute, 2007-2009. All Rights Reserved.