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Which Python scripts are available?

In version 1.5.0 of MGLTools, these scripts include:

compute_AutoDock41_score.py
compute_consensus_maps_from_dlgs.py
compute_rms_between_methods.py
dpf3_to_dpf4.py
energy_average_maps.py
gpf3_to_gpf4.py
gpf4_to_gpf3.py
pdbq_to_pdbqt.py
pdbqs_to_pdbqt.py
pdbqt_to_pdb.py
pdbqt_to_pdbq.py
pdbqt_to_pdbqs.py
prepare_dpf.py
prepare_dpf4.py
prepare_flexreceptor4.py
prepare_gpf.py
prepare_gpf4.py
prepare_ligand.py
prepare_ligand4.py
prepare_ligand_dict.py
prepare_receptor.py
prepare_receptor4.py
repair_ligand4.py
rotate_molecule.py
summarize_docking_directory.py
summarize_results.py
summarize_results4.py
summarize_time.py
summarize_wcg_docking.py
superimpose_based_on_subset.py
write_all_complexes.py
write_clustering_histogram_postscript.py
write_component_energies.py
write_largest_cluster_ligand.py
write_lowest_energy_ligand.py
write_random_state_ligand.py

Note that the scripts that end in "4.py" are for AutoDock 4.  See the "How to" section to learn more about these scripts.

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Where do I download the Python scripts from?

All the AutoDock Python scripts are distributed as part of AutoDockTools, which is distributed as part of the MGLTools bundle.

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Where are these Python scripts installed?

They can be found at the following locations, depending on your platform (Linux, Mac OS X or Windows) and on the version of MGLTools you installed (1.5.0):
 

Linux

    <InstallationDirectory>/MGLToolsPckgs/AutoDockTools/Utilities24

    If you install as root, <InstallationDirectory> is:

    /usr/local/MGLTools-1.5.0

    If you install as a regular user, <InstallationDirectory> is:

    $HOME/MGLTools-1.5.0

Mac OS X

    /Library/MGLTools/1.5.0/MGLToolsPckgs/AutoDockTools/Utilities24

Windows

    <InstallationDirectory>\MGLToolsPckgs\AutoDockTools\Utilities24

    Note that by default,  <InstallationDirectory> is:

    C:\Program Files\MGLTools 1.5.0