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- How do I install AutoDock on Linux and Mac OS X? [1%] by morris, 2010-08-26 09:56
- I've downloaded the tar.gz file containing the AutoDock and AutoGrid executables. How do I install them?
- Where do I set the AutoDock 4 force field parameters? [1%] by morris, 2007-07-26 19:11
- Where can I see or change the values of the van der Waals parameters, hydrogen bonding parameters, and/or atomic solvation parameters ? Where can I see which ...
- Obtaining AutoDock3 [1%] by morris, 2009-05-18 15:40
- How to obtain AutoDock, and information on supported platforms.
- How to use this resource [1%] by morris, 2007-05-02 16:16
- A brief description of how you use and contribute to the Help Center.
- How do I search the ADL (AutoDock mailing list) archives? [1%] by morris, 2007-04-26 19:47
- I want to search the ADL (AutoDock mailing list) archives. How do I do it?
- How do I join the ADL (AutoDock mailing list)? [1%] by morris, 2007-04-26 19:48
- I've heard there is a mailing list for AutoDock, called "ADL". How do I join?
- How do I report a bug? [1%] by morris, 2007-04-26 15:48
- Something didn't work as I expected, when using AutoGrid, AutoDock or ADT. How should I report a bug?
- Olson Laboratory, TSRI [1%] by morris, 2007-05-08 11:35
- This is the location of the Olson Laboratory, also known as the "Molecular Graphics Laboratory".
- ZINC [1%] by morris, 2007-04-26 13:52
- ZINC is a free database of commercially-available compounds for virtual screening, and a great source of input small molecules for AutoDock. ZINC contains over ...
- AutoDock 4 will be distributed under the Gnu GPL [1%] by morris, 2007-05-04 10:44
- A message from Prof. Arthur J. Olson.
- Successfully Docking to Proteins with Metal Ions [1%] by morris, 2007-05-04 10:45
- Many enzyme targets have metal ions in their active sites that play key roles in substrate binding and catalysis. A recent paper in Proteins investigated how ...
- What is the format of a PDBQT file? [1%] by morris, 2007-04-11 16:26
- I've heard that AutoDock 4 uses PDBQT formatted files for the receptor and the ligand. What is the format of a PDBQT file?
- Can AutoDock be used for "Blind Docking"? [1%] by morris, 2007-04-02 16:41
- Can AutoDock be used when the structure of the ligand and the protein are both known, but the location of the binding site is unknown?
- How do I download ADT (AutoDockTools)? [1%] by morris, 2007-03-27 10:53
- I have downloaded AutoDock, but it does not include ADT (the graphical user interface, also known as AutoDockTools). How do I download ADT?
- What are the commands to start AutoGrid 4 and AutoDock 4? [1%] by morris, 2007-03-27 10:41
- I have downloaded AutoDock 4. How do I start AutoGrid 4 and AutoDock 4 from the command line?
- What are the commands to start AutoGrid 3 and AutoDock 3? [1%] by morris, 2007-03-27 10:41
- I have downloaded AutoDock 3. How do I start AutoGrid 3 and AutoDock 3 from the command line?
- Is there a way to save a protein-ligand complex as a PDB file in AutoDock? [1%] by morris, 2007-03-25 23:14
- I have completed my dockings of a ligand to a protein. Is there a way to save a protein-ligand complex as a PDB file in AutoDock?
- How do I visualise the docking results in the AutoDock log file? [1%] by morris, 2007-03-24 16:49
- I have finished my docking with AutoDock, and I have a DLG (docking log file): how do I visualise the results?
- How can I learn more about how to use Cygwin/Linux/Mac OS X? [1%] by morris, 2007-04-26 20:01
- AutoDock and AutoGrid run on UNIX systems like Cygwin, Darwin, Linux, and Mac OS X. I'm unfamiliar with using the command line in these operating systems. How ...
- How do I download AutoDock? [1%] by morris, 2007-05-07 15:40
- What do I have to do download AutoDock?
- How do I evaluate AutoDock's clustering results? [1%] by morris, 2007-03-19 22:23
- If I have more than one cluster after doing conformational cluster analysis, which one do I choose?
- Desolvation Free Energy Term in AutoDock 4 [1%] by morris, 2007-03-23 17:43
- This page summarizes the AutoDock 4 desolvation free energy term, which is based on new atomic solvation parameters which depend on the absolute partial charge ...
- AutoDock is the most cited docking software [1%] by morris, 2007-05-04 10:44
- A recent publication in Proteins compared the number of citations of 22 different docking programs using the ISI Web of Science; AutoDock was the most cited, ...
- Presentation: Using AutoDock 4 with ADT (Handouts) [1%] by morris, 2008-05-13 18:29
- Presentation: Using AutoDock 4 with ADT (Handouts)
- Using AutoDock 4 with AutoDockTools [1%] by morris, 2007-04-26 09:19
- This tutorial teaches you how to use AutoDockTools to set up AutoGrid 4 grid map calculations, how to set up AutoDock 4 dockings, and how to analyse your ...
- AutoDock 3 User's Guide [1%] by morris, 2006-08-28 18:43
- This is the PDF version of the AutoDock 3 User's Guide.
- AutoDock 3 User's Guide [1%] by morris, 2006-08-28 18:43
- This user guide describes in detail, the theory behind AutoDock, the DPF keywords, example DPFs, and how to get started using AutoGrid and AutoDock. It is ...
- How to Unsubscribe from ADL [1%] by morris, 2007-05-02 16:10
- How to Unsubscribe from ADL, the AutoDock Mailing List
- How to Subscribe to ADL [1%] by morris, 2007-05-02 16:10
- How to Subscribe to ADL, the AutoDock Mailing List.
- Using AutoDock for Virtual Screening [613 KB, PDF] [1%] by morris, 2006-08-26 00:19
- Using AutoDock for Virtual Screening -- step-by-step instructions.
AutoDock4.2.6