These are the resources available for the AutoDock Suite, including external resources developed by others.
Graphical User Interfaces
Raccoon v1.0 (AutoDock4) & Raccoon v2.0 (AutoDock Vina) – graphical user interfaces to prepare and submit docking jobs with AutoDock4 and AutoDock Vina.
Target analysis and pocket predictions
AutoLigand – ligand site finder and drug development tool
AutoSite – computational method for identifying and characterizing binding sites in macro-molecules with a known three-dimensional structure (receptor)
Specialized methods and protocols
AutoDock covalent docking – a method to perform covalent docking of molecules (tethered docking)
Hydrated docking – force field and hydration docking method for automated prediction of waters mediating the binding of ligands with target proteins
AutoDock-ZN force field – a specialized potential describing the interactions of zinc-coordinating ligands
Macrocycle docking – docking macrocycles as flexible during docking
Multiple ligand docking – simultaneous docking of multiple ligands
Advanced Python scripting – setting up and running docking calculations using Python
New atom types – How to add atom type parameters that are not in the AutoDock force field
A collection of useful external resources